Nicolas Vergne Publications

Accueil
CV
Publications
Enseignements

Articles

  • Drifting Markov Models with Polynomial Drift and Applications to DNA Sequences. N. Vergne. Statistical Applications in Genetics and Molecular Biology 7 2008. [PDF]
  • Poisson approximation for search of rare words in DNA sequences. N. Vergne and M. Abadi. ALEA 4 2008. [PDF]
  • Sharp error for point-wise Poisson approximations in mixing processes. M. Abadi and N. Vergne. Nonlinearity 21 2008. [PDF]
  • Sharp error terms for return time statistics under mixing conditions. M. Abadi and N. Vergne. Journal of Theoretical Probability 22 2009. [PDF]
  • Coalescent-based DNA barcoding: multilocus analysis and robustness. O. David, C. Larédo, R. Leblois, B. Schaeffer and N. Vergne . Journal of Computational Biology 19 2012. [PDF][Supp_PDF]
  • Pre-silencing of genes involved in the electron transport chain (ETC) pathway is associated with responsiveness to abatacept in rheumatoid arthritis. C. Derambure, G. Dzangue-Tchoupou, C. Bérard, N. Vergne, M. Hiron M D'agostino, P. Musette, O. Vittecoq and T. Lequerré. Arthritis Research and Therapy 19 2017.
  • Comparative in depth RNA sequencing of P. tricornutum’s morphotypes reveals specific features of the oval morphotype. C. Ovide, M.C. Kiefer-Meyer, C. Berard, N. Vergne, T. Lecroq, C. Plasson, C. Burel, S.Bernard, A. Driouich, P.Lerouge, I. Tournier, H. Dauchel, M. Bardor. Scientific Reports, Nature Publishing Group. 8 2018.
  • Reliability and survival analysis for drifting Markov models: modeling and estimation. V.S. Barbu and N. Vergne. Methodology and Computing in Applied Probability, Springer Verlag. 2018.
  • SMM: An R Package for Estimation and Simulation of Discrete-time semi-Markov Models. V.S. Barbu C. Bérard, D. Cellier, M. Sautreuil and N. Vergne. The R Journal. 2018.

Posters

  • RNA-seq : a new tool to study Phaeodactylum tricornutum morphogenesis. C. Ovide, M.C. Kiefer-Meyer, W. Tair, C. Bérard, N. Vergne, T. Lecroq, P. Lerouge, I. Tournier, H. Dauchel, M. Bardor. Plant Genomics Congress. Mai 2013, Londres.
  • Towards a better understanding of Phaeodactylum tricornutum’s morphogenesis. C. Ovide, M.C. Kiefer-Meyer, W. Tair, C. Bérard, N. Vergne, T. Lecroq, P. Lerouge, I. Tournier, H. Dauchel, M. Bardor. EMBO Workshop, The molecular Life of diatoms. Juin 2013, Paris.
  • Elucidation of the morphogenesis mechanisms in the diatom P. tricornutum using RNA sequencing technology. C. Ovide, M.C. Kiefer-Meyer, W. Tair, C. Bérard, N. Vergne, T. Lecroq, P. Lerouge, I. Tournier, H. Dauchel, M. Bardor. 17ième Journées de l’Ecole Doctorale NBISE. Avril 2014, Le Havre.
  • GC- VC/DGE: a user-friendly web application for Going over Concordance across results from NGS bioinformatics analytic pipelines. C. Bérard, A. Bertrand, C. Cabot, H. Dauchel, A. Lefebvre, M. Mary, A. Renaux, C. Saad, A. Velt and N. Vergne. ECCB (European Conference in Computational Biology). Septembre 2014, à Strasbourg.
  • Bivariate Negative Binomial Mixture Model for the analysis of RNA-seq data. M. Sautreuil, N. Vergne, A. Channarond, A. Roche, G. Chagny, C. Bérard. JOBIM. 2017, Lille.

Conférences, colloques, séminaires

  • Rates of Phylogenetic and supervised Classification Algorithms in DNA Barcoding. C. Larédo, N. Vergne, F. Austerlitz, O. David, B. Schaeffer, K. Bleakleyand and M. Veuille. "Third International Barcode of Life Conference". Novembre 2009, à Mexico.
  • Méthode bayésienne de classification des séquences Barcode basée sur la coalescence. N. Vergne. Journées MAS. Septembre 2010, à Bordeaux.
  • Towards a better understanding of Phaeodactylum tricornutum’s morphogenesis. . Bardor, C. Bérard, H. Dauchel, M.C. Kiefer-Meyer, T. Lecroq, P. Lerouge, C. Ovide, W. Tair, I. Tournier and N. Vergne. Plant Genomics Congress. 13-14 May 2013, London Heathow, UK.
  • Elucidation of the morphogenesis mechanisms in the diatom P. tricornutum using RNA sequencing technology. C. Ovide, M.C. Kiefer-Meyer, W. Tair, C. Bérard, N. Vergne, T. Lecroq, P. Lerouge, I. Tournier, H. Dauchel, M. Bardor. 17ième Journées de l’Ecole Doctorale NBISE. Avril 2014, Le Havre.
  • Etude des mécanismes de morphogenèse chez la diatomée modèle Phaeodactylum tricornutum par séquençage d’ARN à haut débit (RNA-Seq). C. Ovide, M.C. Kiefer-Meyer, W. Tair, C. Bérard, N. Vergne, T. Lecroq, P. Lerouge, I. Tournier, H. Dauchel, M. Bardor. Journées phycologiques de France. Septembre 2015, Vannes.
  • RNA Sequencing technology will help deciphering the morphogenesis mechanisms in the model diatom Phaeodactylum tricornutum. C. Ovide, M.C. Kiefer-Meyer, W. Tair, C. Bérard, N. Vergne, T. Lecroq, P. Lerouge, I. Tournier, H. Dauchel, M. Bardor. Journée scientifique du GRR-IRIB. Juin 2015, Mont-Saint-Aignan.
  • Estimation paramétrique des chaînes semi-markoviennes pour des données censurées. V.S. Barbu, C. Bérard, D. Cellier, M. Sautreuil, N. Vergne. Journées de Statistique. 2017, Avignon.
  • Drifting Markov models applied in reliability theory and survival analysis. V.S. Barbu and N. Vergne. Journées de Statistique. 2017, Avignon.
  • DRIMM'R and WebDRIMM: an R package and a web interface for drifting Markov model estimation and reliability. V.S. Barbu G. Brelurut, A. Gilles, A. Lefebvre, V. Mataigne and N. Vergne. Journées de Statistique. 2018 ,Paris.
  • Modèle de mélange binomial négatif bivarié pour l'analyse de données RNA-Seq. M. Sautreuil, C. Bérard, G. Chagny, A. Channarond, A. Roche and N. Vergne. Journées de Statistique. 2018 ,Paris.
  • Drifting Markov and semi-Markov models: modeling, estimation and applications. N. Vergne and V.S Barbu. STODEP. 2018,Rouen.
  • mCNA : a new methodology to improve high-resolution copy number variation analysis from next generation sequencing using unique molecular identifiers. P.J. Viailly, A. Abdel Sater, H. Dauchel, A. Celebi, C. Bérard, N. Vergne, M. Viennot, E. Bohers, P. Ruminy, T. Lecroq, H. Tilly, P. Vera, F. Jardin. JOBIM. 2019, Nantes.